Package: MUGS 0.1.0

Mengyan Li

MUGS: Multisource Graph Synthesis with EHR Data

We develop Multi-source Graph Synthesis (MUGS), an algorithm designed to create embeddings for pediatric Electronic Health Record (EHR) codes by leveraging graphical information from three distinct sources: (1) pediatric EHR data, (2) EHR data from the general patient population, and (3) existing hierarchical medical ontology knowledge shared across different patient populations. See Li et al. (2024) <doi:10.1038/s41746-024-01320-4> for details.

Authors:Mengyan Li [cre, aut], Thomas Charlon [ctb], Xiaoou Li [aut], Tianxi Cai [aut], PARSE LTD [aut], CELEHS Team [aut]

MUGS_0.1.0.tar.gz
MUGS_0.1.0.zip(r-4.7)MUGS_0.1.0.zip(r-4.6)MUGS_0.1.0.zip(r-4.5)
MUGS_0.1.0.tgz(r-4.6-any)MUGS_0.1.0.tgz(r-4.5-any)
MUGS_0.1.0.tar.gz(r-4.7-any)MUGS_0.1.0.tar.gz(r-4.6-any)
MUGS_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MUGS/json (API)

# Install 'MUGS' in R:
install.packages('MUGS', repos = c('https://celehs.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/celehs/mugs/issues

Pkgdown/docs site:https://celehs.github.io

Datasets:

On CRAN:

Conda:

5.05 score 1 stars 32 scripts 558 downloads 8 exports 39 dependencies

Last updated from:840cae51bb. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK166
source / vignettesOK259
linux-release-x86_64OK182
macos-release-arm64OK142
macos-oldrel-arm64OK107
windows-develOK119
windows-releaseOK138
windows-oldrelOK112
wasm-releaseOK114

Exports:CodeEff_MatrixCodeSiteEff_l2_parDataGen_rare_groupdownload_example_dataevaluation.simget_embedGroupEff_parMUGS

Dependencies:clicodetoolsdata.tabledoSNOWdplyrfastDummiesforeachgenericsglmnetgluegrplassogrpreginlineiteratorslatticelifecyclemagrittrMASSMatrixmvtnormpillarpkgconfigpROCR6RcppRcppArmadilloRcppEigenrlangrsvdshapesnowstringistringrsurvivaltibbletidyselectutf8vctrswithr

CodeEff_Matrix_usage
Introduction | Load the Required Library | Load the Data | Prepare Variables | Run the Function | Examine the Output | Notes | Summary
Rendered fromCodeEff_Matrix_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-23
Started: 2024-12-09

CodeSiteEff_I2_par_usage
Introduction | Load the Required Library | Load the Data | Prepare Variables | Run the Function | Examine the Output | Notes | Summary
Rendered fromCodeSiteEff_I2_par_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-23
Started: 2024-12-09

DataGen_rare_group_usage
Introduction | Load the Required Library | Generate Synthetic Data | Examine the Output | Notes | Summary
Rendered fromDataGen_rare_group_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-23
Started: 2024-12-09

Multisource Graph Synthesis with EHR Data
References
Rendered frommain-steps.Rmdusingknitr::rmarkdown

Last update: 2025-04-23
Started: 2024-12-09

Evaluation_sim_usage
Introduction | Load the Required Library | Load Example Data | Run the Evaluation Simulation | Examine the Output | Notes | Summary
Rendered fromEvaluation_sim_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-15
Started: 2024-12-12

get_embed_usage
Introduction | Load the Required Library | Load Example Data | Run the get_embed Function | Examine the Output | Notes | Summary
Rendered fromget_embed_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-15
Started: 2024-12-09

GroupEff_par_usage
Introduction | Load the Required Library | Load the Data | Prepare Variables | Run the Function | Examine the Output | Notes | Summary
Rendered fromGroupEff_par_usage.Rmdusingknitr::rmarkdown

Last update: 2025-04-15
Started: 2024-12-12