{
  "_id": "6ad1e9720edca5be25022749",
  "Package": "PheNorm",
  "Type": "Package",
  "Title": "Unsupervised Gold-Standard Label Free Phenotyping Algorithm for\nEHR Data",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Sheng\", \"Yu\", role = \"aut\"),\nperson(\"Victor\", \"Castro\", role = \"aut\"),\nperson(\"Clara-Lea\", \"Bonzel\", role = c(\"aut\", \"cre\"), email = \"clbonzel@hsph.harvard.edu\"),\nperson(\"Molei\", \"Liu\", role = \"aut\"),\nperson(\"Chuan\", \"Hong\", role = \"aut\"),\nperson(\"Tianxi\", \"Cai\", role = \"aut\"),\nperson(family = \"PARSE LTD\", role = \"aut\", email = \"software@parse-health.org\")\n)",
  "Description": "The algorithm combines the most predictive variable, such\nas count of the main International Classification of Diseases\n(ICD) codes, and other Electronic Health Record (EHR) features\n(e.g. health utilization and processed clinical note data), to\nobtain a score for accurate risk prediction and disease\nclassification. In particular, it normalizes the surrogate to\nresemble gaussian mixture and leverages the remaining features\nthrough random corruption denoising. Background and details\nabout the method can be found at Yu et al. (2018)\n<doi:10.1093/jamia/ocx111>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "URL": "https://celehs.github.io/PheNorm/",
  "BugReports": "https://github.com/celehs/PheNorm/issues",
  "VignetteBuilder": "knitr",
  "Repository": "https://celehs.r-universe.dev",
  "Date/Publication": "2021-02-23 06:08:30 UTC",
  "RemoteUrl": "https://github.com/celehs/phenorm",
  "RemoteRef": "HEAD",
  "RemoteSha": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-16 08:09:20 UTC",
    "User": "root"
  },
  "Author": "Sheng Yu [aut],\nVictor Castro [aut],\nClara-Lea Bonzel [aut, cre],\nMolei Liu [aut],\nChuan Hong [aut],\nTianxi Cai [aut],\nPARSE LTD [aut]",
  "Maintainer": "Clara-Lea Bonzel <clbonzel@hsph.harvard.edu>",
  "_user": "celehs",
  "_type": "src",
  "_file": "PheNorm_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/0ee11f3053cde40cb407552bcc114e4a89d8f5ca4eeb7f2a204d2257e48347b4",
  "_filesize": 83528,
  "_sha256": "0ee11f3053cde40cb407552bcc114e4a89d8f5ca4eeb7f2a204d2257e48347b4",
  "_expires": "2027-01-24T09:08:00.000Z",
  "_created": "2026-10-16T08:09:20.000Z",
  "_published": "2026-10-16T09:08:02.590Z",
  "_buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116877486548,
      "time": 123,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12033354499"
    },
    {
      "job": 116877486543,
      "time": 112,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12032979942"
    },
    {
      "job": 116877486910,
      "time": 107,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12036531243"
    },
    {
      "job": 116877486550,
      "time": 105,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12036540846"
    },
    {
      "job": 116876310346,
      "time": 191,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12032979594"
    },
    {
      "job": 116877486545,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12033920049"
    },
    {
      "job": 116877486644,
      "time": 90,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12033033726"
    },
    {
      "job": 116877486534,
      "time": 93,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12033264861"
    },
    {
      "job": 116877486781,
      "time": 63,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12033593338"
    }
  ],
  "_upstream": "https://github.com/celehs/phenorm",
  "_commit": {
    "id": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
    "author": "Ming Yang <hustyangming@gmail.com>",
    "committer": "Ming Yang <hustyangming@gmail.com>",
    "message": "update website\n",
    "time": 1614060510
  },
  "_maintainer": {
    "name": "Clara-Lea Bonzel",
    "email": "clbonzel@hsph.harvard.edu"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "celehs",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 5,
  "_contributors": [
    {
      "user": "mingstat",
      "count": 5,
      "uuid": 5520067
    },
    {
      "user": "celehs",
      "count": 1,
      "uuid": 44823506
    }
  ],
  "_userbio": {
    "uuid": 44823506,
    "type": "user",
    "name": "CELEHS",
    "followers": 61,
    "description": "Translational Data Science Center for a Learning Health System"
  },
  "_downloads": {
    "count": 237,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PheNorm"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/celehs/phenorm",
  "_pkgdown": "https://celehs.github.io/PheNorm/",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/PheNorm.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/celehs/phenorm",
  "_realowner": "celehs",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-01-07"
    }
  ],
  "_exports": [
    "PheNorm.Prob"
  ],
  "_help": [
    {
      "page": "PheNorm.Prob",
      "title": "Fit the phenotyping algorithm PheNorm using EHR features",
      "topics": [
        "PheNorm.Prob"
      ]
    }
  ],
  "_readme": "https://github.com/celehs/phenorm/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "example.Rmd",
      "filename": "example.html",
      "title": "Example on simulated dataset",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2021-02-20 11:03:24",
      "modified": "2021-02-20 11:14:07",
      "commits": 2
    }
  ],
  "_score": 4.698970004336019,
  "_indexed": true,
  "_nocasepkg": "phenorm",
  "_universes": [
    "celehs"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-16T08:11:12.000Z",
      "distro": "resolute",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/f933841e3a4d9e3abb4b2686b61e121b8c1514fd429859b6333a6fd6b313b326",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-10-16T08:10:59.000Z",
      "distro": "resolute",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/cef9e4d1dc6378c6a6c6687fcc0fd3c68aceba01150ba2c3d30b44bdcf7ae1df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-16T09:07:18.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/0abe80db4ff254cbff1f625c067e3487fcc88fe2d4af641d90dce1fdf03daccf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-10-16T09:05:28.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/9087634841f551cf2c9566b469cc5ea7b2a0ccfe841f5d2e38986905e6b1b835",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-10-16T08:10:58.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/d9777b4870868ccbc545c1317546da80b4ce3be2efc5aed47d9110d9de3f467c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-16T08:10:20.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/9227942410afa7c84af5d5fa07142e3649df28de9d7c2dbf95b5aba691dfb599",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-16T08:10:17.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/2f36d88082717891b08af781da24b23b75e3efd800b2c23bf48beeaf0f605b39",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-10-16T08:10:10.000Z",
      "commit": "7ea2ecee5b4ce88c029eee22341cc5536167effc",
      "fileid": "https://r2.ropensci.org/149e9881f35fbeae912dbf16bba9302ba4d5583cd86fae41292cbb18d4795764",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/celehs/actions/runs/38871434892"
    }
  ]
}